Stem-loop ath-MIR3932b

Accession

MI0016588

Description

Arabidopsis thaliana ath-MIR3932b precursor miRNA MIR3932

Gene
family

RF03670; MIR3932

Literature search

1 open access papers mention ath-MIR3932b
(2 sentences)

Sequence

118588 reads, 290.0 reads per million, 177 experiments

agugUUUGACGUGCUCGAUCUGCUccuuuaugucuucauugucaucacaaauuucuucaaacuuaaauaucuuaaggaccuucaccggacuugauaauagagauuaACGAACUUUGUGAUGACAACGAAgacacagcugaucaaaucaag
................((((.(((......(((((((.(((((((((((((.(((......(((...((((..(((..((......)).)))))))...)))......))).))))))))))))).))))))).))).))))........

Structure

agugUUUGACGUGCUC    U   ccuuua       a             u   uucaaa   aaa    uu   ga  uu 
                GAUC GCU      ugucuuc uugucaucacaaa uuc      cuu   uauc  aag  cc  c
                |||| |||      ||||||| ||||||||||||| |||      |||   ||||  |||  ||   
                cuag cga      acagAAG AACAGUAGUGUUU AAG      gag   auag  uuc  gg  a
--------gaacuaaa    u   -----c       C             C   CAauua   aua    --   -a  cc 

Annotation confidence Low

Genome context

chr4: 7890570-7890719 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ath-MIR3932b

Mature ath-miR3932b-5p

• Accession: MIMAT0032113
• Description: Arabidopsis thaliana ath-miR3932b-5p mature miRNA
• Sequence: 5 - UUUGACGUGCUCGAUCUGCU - 24
• Evidence: not_experimental

Mature ath-miR3932b-3p

• Accession: MIMAT0018347
• Description: Arabidopsis thaliana ath-miR3932b-3p mature miRNA
• Sequence: 107 - ACGAACUUUGUGAUGACAACGAA - 129
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20621980
   siRNAs from miRNA sites mediate DNA methylation of target genes
   "Chellappan P, Xia J, Zhou X, Gao S, Zhang X, Coutino G, Vazquez F, Zhang W, Jin H"
   "Nucleic Acids Res (2010) 38:6883-6894