Stem-loop ath-MIR3933

Accession

MI0016589

Description

Arabidopsis thaliana ath-MIR3933 precursor miRNA

Literature search

1 open access papers mention ath-MIR3933
(2 sentences)

Sequence

10590 reads, 81.0 reads per million, 118 experiments

cuuagaAGAAGCAAAAUGACGACUCGGacaacaauaauacaaaacuaauacuuauuguugUCGGAGUCGUCAUUUUGCAUCUucuaag
(((((((((.(((((((((((((((.(((((((((((..............))))))))))).))))))))))))))).)))))))))

Structure

         A               G           uacaaa 
cuuagaAGA GCAAAAUGACGACUC Gacaacaauaa      a
||||||||| ||||||||||||||| |||||||||||       
gaaucuUCU CGUUUUACUGCUGAG CUguuguuauu      c
         A               G           cauaau 

Annotation confidence High

Genome context

chr5: 15758105-15758192 [+]

Mature ath-miR3933-5p

• Accession: MIMAT0018348
• Description: Arabidopsis thaliana ath-miR3933-5p mature miRNA
• Sequence: 7 - AGAAGCAAAAUGACGACUCGG - 27
• Evidence: experimental ; Illumina [1]

Mature ath-miR3933-3p

• Accession: MIMAT0053902
• Description: Arabidopsis thaliana ath-miR3933-3p mature miRNA
• Sequence: 61 - UCGGAGUCGUCAUUUUGCAUCU - 82
• Evidence: experimental ; unknown

References

1. PubMed ID: 20621980
   siRNAs from miRNA sites mediate DNA methylation of target genes
   "Chellappan P, Xia J, Zhou X, Gao S, Zhang X, Coutino G, Vazquez F, Zhang W, Jin H"
   "Nucleic Acids Res (2010) 38:6883-6894