Stem-loop hsa-mir-3940

Accession

MI0016597

Symbol

HGNC: MIR3940

Description

Homo sapiens hsa-mir-3940 precursor miRNA mir-3940

Gene
family

RF03486; mir-3940

Literature search

13 open access papers mention hsa-mir-3940
(22 sentences)

Sequence

302 reads, 25 reads per million, 56 experiments

gcuuaucgaggaaaagaucgagGUGGGUUGGGGCGGGCUCUGgggauuuggucucaCAGCCCGGAUCCCAGCCCACUUaccuugguuacucuccuuccuucu
.......(((((...((((((((((((((((((((((((.(((((......))))).))))))..)))))))))....)))))))))....)))))......

Structure

gcuuauc     -aaa         ----         --      C     au 
       gagga    gaucgagGU    GGGUUGGGG  CGGGCU UGggg  u
       |||||    |||||||||    |||||||||  |||||| |||||   
       uuccu    uugguucca    CCCGACCCU  GCCCGA acucu  u
-ucuucc     cuca         UUCA         AG      C     gg 

Annotation confidence High

Genome context

chr19: 6416410-6416511 [-]

Mature hsa-miR-3940-3p

• Accession: MIMAT0018356
• Description: Homo sapiens hsa-miR-3940-3p mature miRNA
• Sequence: 57 - CAGCCCGGAUCCCAGCCCACUU - 78
• Evidence: experimental ; Illumina [1-2]

Mature hsa-miR-3940-5p

• Accession: MIMAT0019229
• Description: Homo sapiens hsa-miR-3940-5p mature miRNA
• Sequence: 23 - GUGGGUUGGGGCGGGCUCUG - 42
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20498841
   Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers
   Liao JY, Ma LM, Guo YH, Zhang YC, Zhou H, Shao P, Chen YQ, Qu LH
   PLoS One (2010) 5:e10563


2. PubMed ID: 21199797
   Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene
   "Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C"
   "Cancer Res (2011) 71:78-86