Stem-loop ssc-mir-451

Accession

MI0016623

Description

Sus scrofa ssc-mir-451 precursor miRNA

Literature search

16 open access papers mention ssc-mir-451
(42 sentences)

Sequence

2469 reads, 851 reads per million, 12 experiments

ggggguggcgagcAAACCGUUACCAUUACUGAGUUuaguaaugguaacgguucucuugcugcacc
..((((((((((..(((((((((((((((((....)))))))))))))))))..)))))))).))

Structure

gg  -        cA                 A 
  gg guggcgag  AACCGUUACCAUUACUG G
  || ||||||||  |||||||||||||||||  
  cc cgucguuc  uuggcaaugguaaugau U
--  a        uc                 U 

Annotation confidence Not enough data

Genome context

chr12: 47177114-47177178 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-451

Mature ssc-miR-451

• Accession: MIMAT0018382
• Description: Sus scrofa ssc-miR-451 mature miRNA
• Sequence: 14 - AAACCGUUACCAUUACUGAGUU - 35
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


2. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100