Stem-loop hsa-mir-642b

Accession

MI0016685

Symbol

HGNC: MIR642B

Description

Homo sapiens hsa-mir-642b precursor miRNA mir-642

Gene
family

RF00963; mir-642

Literature search

7 open access papers mention hsa-mir-642b
(31 sentences)

Sequence

1442 reads, 16 reads per million, 92 experiments

gaguugggaGGUUCCCUCUCCAAAUGUGUCUugaucccccaccccaAGACACAUUUGGAGAGGGACCCucccaacuc
(((((((((((.(((((((((((((((((((((...........))))))))))))))))))))).)))))))))))

Structure

           U                     aucc 
gaguugggaGG UCCCUCUCCAAAUGUGUCUug    c
||||||||||| |||||||||||||||||||||    c
cucaacccuCC AGGGAGAGGUUUACACAGAac    c
           C                     ccca 

Annotation confidence High

Genome context

chr19: 45674932-45675008 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from hsa-mir-642b

Disease association

hsa-mir-642b is associated with one or more human diseases in the Human microRNA Disease Database

Mature hsa-miR-642b-3p

• Accession: MIMAT0018444
• Description: Homo sapiens hsa-miR-642b-3p mature miRNA
• Sequence: 47 - AGACACAUUUGGAGAGGGACCC - 68
• Evidence: experimental ; Illumina [1]

Mature hsa-miR-642b-5p

• Accession: MIMAT0022736
• Description: Homo sapiens hsa-miR-642b-5p mature miRNA
• Sequence: 10 - GGUUCCCUCUCCAAAUGUGUCU - 31
• Evidence: not_experimental

References

1. PubMed ID: 20459774
   Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls
   Witten D, Tibshirani R, Gu SG, Fire A, Lui WO
   BMC Biol (2010) 8:58