miRBase entry: hsa-mir-642b

Stem-loop hsa-mir-642b

Accession

MI0016685

Symbol

HGNC: MIR642B

Description

Homo sapiens hsa-mir-642b precursor miRNA mir-642

Gene
family?

RF00963; mir-642

Literature search

7 open access papers mention hsa-mir-642b
(31 sentences)

Sequence

441 reads, 3 reads per million, 57 experiments

gaguugggaGGUUCCCUCUCCAAAUGUGUCUugaucccccaccccaAGACACAUUUGGAGAGGGACCCucccaacuc
(((((((((((.(((((((((((((((((((((...........))))))))))))))))))))).)))))))))))

Structure

           U                     aucc 
gaguugggaGG UCCCUCUCCAAAUGUGUCUug    c
||||||||||| |||||||||||||||||||||    c
cucaacccuCC AGGGAGAGGUUUACACAGAac    c
           C                     ccca

Annotation confidence Medium

Do you think this miRNA is real?

Genome context

chr19: 45674932-45675008 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from hsa-mir-642b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Disease association

hsa-mir-642b is associated with one or more human diseases in the Human microRNA Disease Database

Disease	Description	Category	PubMed ID

Database links

Mature hsa-miR-642b-3p

Accession	MIMAT0018444
Description	Homo sapiens hsa-miR-642b-3p mature miRNA
Sequence	47 - AGACACAUUUGGAGAGGGACCC - 68
Evidence	experimental Illumina [1]
Database links
Predicted targets

Mature hsa-miR-642b-5p

Accession	MIMAT0022736
Description	Homo sapiens hsa-miR-642b-5p mature miRNA
Sequence	10 - GGUUCCCUCUCCAAAUGUGUCU - 31
Evidence	not_experimental

References

PubMed ID: 20459774
Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls
Witten D, Tibshirani R, Gu SG, Fire A, Lui WO
BMC Biol (2010) 8:58