Stem-loop hsa-mir-548z

Accession

MI0016688

Symbol

HGNC: MIR548Z

Description

Homo sapiens hsa-mir-548z precursor miRNA

Literature search

41 open access papers mention hsa-mir-548z
(143 sentences)

Sequence

1909 reads, 25.0 reads per million, 122 experiments

aaguauuaaGUUGGUGCAAAAGUAAUUGagauuuuugcuacugaaaguaauggCAAAAACCGCAAUUACUUUUGCaccaaccuaauagaugccaaug
...(((((.(((((((((((((((((((.(.(((((((((.((....)).))))))))).).))))))))))))))))))).)))))..........

Structure

-------aag     a                   a a         c  a 
          uauua GUUGGUGCAAAAGUAAUUG g uuuuugcua ug a
          ||||| ||||||||||||||||||| | ||||||||| ||  
          auaau caaccaCGUUUUCAUUAAC C AAAAACggu au a
guaaccguag     c                   G C         a  g 

Annotation confidence Low

Genome context

chr12: 64622509-64622605 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from hsa-mir-548z

Mature hsa-miR-548z-5p

• Accession: MIMAT0050604
• Description: Homo sapiens hsa-miR-548z-5p mature miRNA
• Sequence: 10 - GUUGGUGCAAAAGUAAUUG - 28
• Evidence: experimental ; Illumina [1]

Mature hsa-miR-548z-3p

• Accession: MIMAT0018446
• Description: Homo sapiens hsa-miR-548z-3p mature miRNA
• Sequence: 54 - CAAAAACCGCAAUUACUUUUGC - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20459774
   Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls
   Witten D, Tibshirani R, Gu SG, Fire A, Lui WO
   BMC Biol (2010) 8:58