miRBase entry: hsa-mir-548aa-2

Stem-loop hsa-mir-548aa-2

Accession

MI0016690

Symbol

HGNC: MIR548AA2

Description

Homo sapiens hsa-mir-548aa-2 precursor miRNA

Literature search

56 open access papers mention hsa-mir-548aa-2
(170 sentences)

Sequence

2358 reads, 17 reads per million, 70 experiments

uuuuauuagguuggugcaaaagaaacugugguuuuugccauuacuuucaauggcAAAAACCACAAUUACUUUUGCACCAaccuaaaucuucccucuc
.....(((((((((((((((((.((.((((((((((((((((......)))))))))))))))).)).)))))))))))))))))............

Structure

-------uuuua                 a  c                ac 
            uuagguuggugcaaaag aa ugugguuuuugccauu  u
            ||||||||||||||||| || ||||||||||||||||   
            aauccaACCACGUUUUC UU ACACCAAAAAcgguaa  u
cucucccuucua                 A  A                cu

Annotation confidence Not enough data

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Genome context

chr17: 67471489-67471585 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from hsa-mir-548aa-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature hsa-miR-548aa

Accession	MIMAT0018447
Description	Homo sapiens hsa-miR-548aa mature miRNA
Sequence	55 - AAAAACCACAAUUACUUUUGCACCA - 79
Evidence	experimental Illumina [1]
Database links
Predicted targets

References

PubMed ID: 20459774
Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls
Witten D, Tibshirani R, Gu SG, Fire A, Lui WO
BMC Biol (2010) 8:58