Stem-loop hsa-mir-548aa-2

Accession

MI0016690

Symbol

HGNC: MIR548AA2

Description

Homo sapiens hsa-mir-548aa-2 precursor miRNA

Literature search

56 open access papers mention hsa-mir-548aa-2
(171 sentences)

Sequence

3535 reads, 28.0 reads per million, 146 experiments

uuuuauuagguuggUGCAAAAGAAACUGUGGUUUUUgccauuacuuucaauggcAAAAACCACAAUUACUUUUGCAccaaccuaaaucuucccucuc
.....(((((((((((((((((.((.((((((((((((((((......)))))))))))))))).)).)))))))))))))))))............

Structure

-------uuuua                 A  C                ac 
            uuagguuggUGCAAAAG AA UGUGGUUUUUgccauu  u
            ||||||||||||||||| || ||||||||||||||||   
            aauccaaccACGUUUUC UU ACACCAAAAAcgguaa  u
cucucccuucua                 A  A                cu 

Annotation confidence Medium

Genome context

chr17: 67471489-67471585 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from hsa-mir-548aa-2

Mature hsa-miR-548aa-2-5p

• Accession: MIMAT0050606
• Description: Homo sapiens hsa-miR-548aa-2-5p mature miRNA
• Sequence: 15 - UGCAAAAGAAACUGUGGUUUUU - 36
• Evidence: experimental ; Illumina [1]

Mature hsa-miR-548aa-3p

• Accession: MIMAT0018447
• Description: Homo sapiens hsa-miR-548aa-3p mature miRNA
• Sequence: 55 - AAAAACCACAAUUACUUUUGCA - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20459774
   Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls
   Witten D, Tibshirani R, Gu SG, Fire A, Lui WO
   BMC Biol (2010) 8:58