Stem-loop csi-MIR3946

Accession

MI0016692

Description

Citrus sinensis csi-MIR3946 precursor miRNA

Literature search

2 open access papers mention csi-MIR3946
(17 sentences)

Sequence

auaaagaugaugaugacaaugaauuUUGUAGAGAAAGAGAAGAGAGCACaaacuuuuugcugaaaguagcuuugauucgauguguaucgguucauagauaaugaguuuucaagucuauuuuaauagaauacuaaaaguuagcucuaaaaauc
....(((.(.((((......(.(((((((.((((.(((...((((((.((.((((((....))))))..((.(((.(((((....))))).))).))....)).))))))...))).)))).))))))).).....)))).)))).......

Structure

---auaa   u a    gacaau a       A    A   GAA      A  aacuuuuugcugaaaguag  u   u     g 
       aga g ugau      g auuUUGU GAGA AGA   GAGAGC Ca                   cu uga ucgau u
       ||| | ||||      | ||||||| |||| |||   |||||| ||                   || ||| |||||  
       ucu c auug      c uaagaua uuuu ucu   cuuuug gu                   ga acu ggcua g
cuaaaaa   - g    -aaaau a       a    a   gaa      a  ---------------aaua  u   u     u 

Annotation confidence Not enough data

Genome context

chr8: 625035-625186 [-]

Mature csi-miR3946

• Accession: MIMAT0018449
• Description: Citrus sinensis csi-miR3946 mature miRNA
• Sequence: 26 - UUGUAGAGAAAGAGAAGAGAGCAC - 49
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246