Stem-loop csi-MIR857

Accession

MI0016728

Description

Citrus sinensis csi-MIR857 precursor miRNA

Literature search

3 open access papers mention csi-MIR857
(4 sentences)

Sequence

uguugaaaauugauuaaaaaaaaguugaaaagucaaauucaaagacaucauuugaauucaaaugggagguggccgagaacuuugaaaaguaauuggaaguggccaaaacuaUUUUGAAUGUUGAAUGGUGGCUAUugaauguugaaa
................................((((((((((((.((((((((((((((((((((....(((((....(((((.((......)).))))))))))...))).))))))).)))))))))).)).)))))).))))..

Structure

uguugaaaauugauuaaaaaaaaguugaaaag    -      -  a          -       -   gagg     gaga     g  aa 
                                ucaa auucaa ag caucauuuga auucaaa ugg    uggcc    acuuu aa  g
                                |||| |||||| || |||||||||| ||||||| |||    |||||    ||||| ||   
                                aguu uaaguU UC GUGGUAAGUU UAAGUUU auc    accgg    ugaag uu  u
------------------------------aa    g      A  G          G       U   -aaa     ----     g  aa 

Annotation confidence Not enough data

Genome context

JH999178.1: 74122-74268 [-]

Mature csi-miR857

• Accession: MIMAT0018486
• Description: Citrus sinensis csi-miR857 mature miRNA
• Sequence: 112 - UUUUGAAUGUUGAAUGGUGGCUAU - 135
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246