Stem-loop csi-MIR3947

Accession

MI0016729

Description

Citrus sinensis csi-MIR3947 precursor miRNA

Sequence

aauuagauucaagguuuuuaaguuuuguuaucacuucuuacuauuaaaaauaacaaaugaugagauauguuaugcuacugugaauuaaauguacuuuuuaagacuuaaacucuuaacuucUUAUUUCAGUAGACGACGUCACAugauuagaauauucuuuuau
.......................((((((((..................))))))))....((((.(((((.......(((((......(.((((...(((((.((((....))))..)))))....)))).).....))))).......)))))))))....

Structure

aauuagauucaagguuuuuaaguuuuguuaucacuucuuacuauuaaaaauaacaaaugau    u     augcuac     auuaaa g    -uuu     -c    a 
                                                             gaga auguu       uguga      u uacu    uaaga  uuaa c
                                                             |||| |||||       |||||      | ||||    |||||  ||||  
                                                             uucu uauaa       ACACU      A AUGA    AUUcu  aauu u
---------------------------------------------------------uauu    -     gauuagu     -GCAGC G    CUUU     uc    c 

Annotation confidence Not enough data

Genome context

chr3: 21427651-21427813 [+]

Mature csi-miR3947-5p

• Accession: MIMAT0018487
• Description: Citrus sinensis csi-miR3947-5p mature miRNA
• Sequence: 121 - UUAUUUCAGUAGACGACGUCACA - 143
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246