Stem-loop csi-MIR3948

Accession

MI0016730

Description

Citrus sinensis csi-MIR3948 precursor miRNA

Sequence

aggagugUGGAGUGGGAGUGGGAGUAGGGUGuuuacuuagacuaaaugaaaguauggauuaucaaucagaauccuaauuauuuguuuacuuugucuuggauuuggaguaaauuauuuuaaauuacaauuuuauccuuauguacagaauuauaa
.....((((.(..((((....((((((.....))))))(((((((((((((((..(((((.........)))))..))).))))))))....))))..(((((((((((...))))))))))).........))))..).)))).........

Structure

----aggag    G GU    ------------------------------------------------------------------------------------------GUGG      G 
         ugUG A  GGGA                                                                                              GAGUAG G
         |||| |  ||||                                                                                              |||||| U
         acau u  uccu                                                                                              uucauu G
aauauuaag    g au    auuuuaacauuaaauuuuauuaaaugagguuuagguucuguuucauuuguuuauuaauccuaagacuaacuauuagguaugaaaguaaaucaga      u 

Annotation confidence Not enough data

Genome context

chr2: 26665733-26665885 [+]

Mature csi-miR3948

• Accession: MIMAT0018488
• Description: Citrus sinensis csi-miR3948 mature miRNA
• Sequence: 8 - UGGAGUGGGAGUGGGAGUAGGGUG - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246