Stem-loop csi-MIR1515a

Accession

MI0016731

Description

Citrus sinensis csi-MIR1515a precursor miRNA

Literature search

1 open access papers mention csi-MIR1515a
(1 sentences)

Sequence

3690 reads, 135.0 reads per million, 16 experiments

ucgauuugcaUCAUUUUUGCGUGCAAUGAUCCcgaauuugcucucuuacucaacuuucuuuuuaauuuacaaauauucauguuuauugguuugaaaaauagaaaaaaaaauucuaauuuuuguuaacggggaucuggaucauucacgcaaaAAUGAUUUGACUCGUGAGUUGGC
.((((((((((((((((((((((.((((((((.((......(((((....(((.((((...(((((..(((........)))..)))))...))))..(((((.......)))))....))).....))))))).)))))))))))))))))))))).......))))))))..

Structure

-u        -------              C        c  auuugc     -uacu   ----------------------c    uuu     uu   aau 
  cgauuugc       aUCAUUUUUGCGUG AAUGAUCC ga      ucucu     caa                       uuuc   uuaau  aca   a
  ||||||||       |||||||||||||| |||||||| ||      |||||     |||                       ||||   |||||  |||    
  GUUGAGUG       UAGUAAaaacgcac uuacuagg cu      agggg     guu                       aaag   gguua  ugu   u
CG        CUCAGUU              -        u  ------     caauu   uuuaaucuuaaaaaaaaagauaa    uuu     uu   acu 

Annotation confidence Low

Genome context

chr1: 22741515-22741688 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from csi-MIR1515a

Mature csi-miR1515a-5p

• Accession: MIMAT0018489
• Description: Citrus sinensis csi-miR1515a-5p mature miRNA
• Sequence: 11 - UCAUUUUUGCGUGCAAUGAUCC - 32
• Evidence: experimental ; Illumina [1]

Mature csi-miR1515a-3p

• Accession: MIMAT0057172
• Description: Citrus sinensis csi-miR1515a-3p mature miRNA
• Sequence: 152 - AAUGAUUUGACUCGUGAGUUGGC - 174
• Evidence: experimental ; unknown

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246