Stem-loop csi-MIR3950

Accession

MI0016733

Description

Citrus sinensis csi-MIR3950 precursor miRNA

Literature search

1 open access papers mention csi-MIR3950
(1 sentences)

Sequence

121 reads, 8.0 reads per million, 16 experiments

aaaacccaauUUUUUCGGCAACAUGAUUUCUuaguagaaaccaaaauuuacuuuuugugccaacaggauuuauaauaagaauuuaugcaaacggauuucuuuuagaagucaaAUUUUGACAAGAUUGAUCAucaucguuggugggaaacaccaaguuu
......(((((((.((((.((..((((((((....(((((((..........((((((....))))))..(((((.......))))).....)).)))))...))))))))..)))))).)))))))..........((((((.....))))))....

Structure

-------------------------aaaacc       U    C  CA        uagu     -  --------------aaaauuuacu      g 
                               caauUUU UCGG AA  UGAUUUCU    agaaa cc                        uuuugu c
                               ||||||| |||| ||  ||||||||    ||||| ||                        ||||||  
                               GUUAGAA AGUU UU  acugaaga    ucuuu gg                        aggaca c
uuugaaccacaaagggugguugcuacuACUA       C    -  Aa        -uuu     a  caaacguauuuaagaauaauauuu      a 

Annotation confidence Low

Genome context

Unknown

Mature csi-miR3950-5p

• Accession: MIMAT0018491
• Description: Citrus sinensis csi-miR3950-5p mature miRNA
• Sequence: 11 - UUUUUCGGCAACAUGAUUUCU - 31
• Evidence: experimental ; Illumina [1]

Mature csi-miR3950-3p

• Accession: MIMAT0057173
• Description: Citrus sinensis csi-miR3950-3p mature miRNA
• Sequence: 113 - AUUUUGACAAGAUUGAUCA - 131
• Evidence: experimental ; unknown

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246