Stem-loop csi-MIR396c

Accession

MI0016735

Description

Citrus sinensis csi-MIR396c precursor miRNA

Literature search

1 open access papers mention csi-MIR396c
(7 sentences)

Sequence

105499 reads, 12527.0 reads per million, 16 experiments

cauguuuUUCCACAGCUUUCUUGAACUUcuuucuuucuucuucuucuucuucuucuucuucuucuucuucuucuucuucuuuuucuaauaauaggcuacgauuugauguggcuagcugcagcuauuagaagUUCAAGAAAUCUGUGGGAAGaaauggcaaa
(((.(((((((((((.((((((((((((((......................................................(((....)))(((((........)))))((((....))))..)))))))))))))).))))))))))).))).....

Structure

-----   g           C              uucuuucuucuucuucuucuucuucuucuucuucuucuucuucuucuucuuuuucuaauaauag     gau 
     cau uuuUUCCACAG UUUCUUGAACUUcu                                                                gcuac   u
     ||| ||||||||||| ||||||||||||||                                                                |||||    
     gua aGAAGGGUGUC AAAGAACUUgaaga                                                                cggug   u
aaacg   a           U              --------------------------------------------------uuaucgacgucgau     uag 

Annotation confidence High

Genome context

chr1: 15270024-15270184 [-]

Mature csi-miR396c-5p

• Accession: MIMAT0057174
• Description: Citrus sinensis csi-miR396c-5p mature miRNA
• Sequence: 8 - UUCCACAGCUUUCUUGAACUU - 28
• Evidence: experimental ; unknown

Mature csi-miR396c-3p

• Accession: MIMAT0018493
• Description: Citrus sinensis csi-miR396c-3p mature miRNA
• Sequence: 132 - UUCAAGAAAUCUGUGGGAAG - 151
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246