Stem-loop csi-MIR3953

Accession

MI0016738

Description

Citrus sinensis csi-MIR3953 precursor miRNA

Literature search

1 open access papers mention csi-MIR3953
(1 sentences)

Sequence

757 reads, 19.0 reads per million, 16 experiments

uggauaaUCUGAUGACUGCAGAGCCCAGacagaggcgucauuccgugcaucauagccaucaccccgucgaUUGAGUUCUGCAAGCCGUCGAguuucugccu
.(((...((.((((.(((((((((.(((.....((((.......(.((......))).......))))..))).))))))).)).))))))...)))....

Structure

---u   uaa  U    A  -       C   acaga    ucauucc u  au 
    gga   UC GAUG CU GCAGAGC CAG     ggcg       g gc  c
    |||   || |||| || ||||||| |||     ||||       | ||   
    ucu   AG CUGC GA CGUCUUG GUU     cugc       c cg  a
uccg   uug  -    C  A       A   ---ag    cccacua -  au 

Annotation confidence High

Genome context

chr7: 20081221-20081321 [-]

Mature csi-miR3953-5p

• Accession: MIMAT0057175
• Description: Citrus sinensis csi-miR3953-5p mature miRNA
• Sequence: 8 - UCUGAUGACUGCAGAGCCCAG - 28
• Evidence: experimental ; unknown

Mature csi-miR3953-3p

• Accession: MIMAT0018496
• Description: Citrus sinensis csi-miR3953-3p mature miRNA
• Sequence: 71 - UUGAGUUCUGCAAGCCGUCGA - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246