Stem-loop csi-MIR3954

Accession

MI0016739

Description

Citrus sinensis csi-MIR3954 precursor miRNA

Literature search

2 open access papers mention csi-MIR3954
(3 sentences)

Sequence

uuuacuuggcUGGACAGAGAAAUCACGGUCAagucucuucuuguucaggaaacgauugaugauuucuucuucaucugguggauggaa
((((.((.((((((.(((((((((((((((..((.((((.......)))).))))))).))))))).)))...)))))).)))))).

Structure

-    c  g      --C   -       -     Aa  c    cu 
 uuua uu gcUGGA   AGA GAAAUCA CGGUC  gu ucuu  u
 |||| || ||||||   ||| ||||||| |||||  || ||||  g
 aggu ag uggucu   ucu cuuuagu guuag  ca agga  u
a    -  g      acu   u       a     --  a    cu 

Annotation confidence Not enough data

Genome context

chr7: 20108227-20108313 [-]

Mature csi-miR3954

• Accession: MIMAT0018497
• Description: Citrus sinensis csi-miR3954 mature miRNA
• Sequence: 11 - UGGACAGAGAAAUCACGGUCA - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246