Stem-loop oar-mir-493

Accession

MI0016912

Description

Ovis aries oar-mir-493 precursor miRNA

Literature search

5 open access papers mention oar-mir-493
(5 sentences)

Sequence

3726 reads, 664 reads per million, 13 experiments

ggggcucccucuggcccccagggccUUGUACAUGGUAGGCUUUCAUUcauucguuugcacauucggUGAAGGUCUACUGUGUGCCAGGcccugugccaggcagcaaguaaaugga
...(((...((((((...((((((((.((((((((((((((((((((.................)))))))))))))))))))).)))))))).)))))).)))...........

Structure

--------ggg   ccc      ccc        U                    cauucgu 
           gcu   ucuggc   cagggccU GUACAUGGUAGGCUUUCAUU       u
           |||   ||||||   |||||||| ||||||||||||||||||||       u
           cga   ggaccg   gucccGGA CGUGUGUCAUCUGGAAGUgg       g
agguaaaugaa   --c      --u        C                    cuuacac 

Annotation confidence High

Genome context

chr18: 64369115-64369229 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oar-mir-493

Mature oar-miR-493-5p

• Accession: MIMAT0019237
• Description: Ovis aries oar-miR-493-5p mature miRNA
• Sequence: 26 - UUGUACAUGGUAGGCUUUCAUU - 47
• Evidence: experimental ; Illumina [1]

Mature oar-miR-493-3p

• Accession: MIMAT0019238
• Description: Ovis aries oar-miR-493-3p mature miRNA
• Sequence: 67 - UGAAGGUCUACUGUGUGCCAGG - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662