Stem-loop oar-mir-433

Accession

MI0016914

Description

Ovis aries oar-mir-433 precursor miRNA

Literature search

7 open access papers mention oar-mir-433
(15 sentences)

Sequence

580 reads, 93 reads per million, 13 experiments

acccaguggccggggagaagUACGGUGAGCCUGUCAUUGUUCAgagaggcuagauccuccuuguugagaaggAUCAUGAUGGGCUCCUCGGUGUucuccagguagcggcaccac
..((.((.(((..((((((...(((.(((((((((((...............((((((.(((...))).))))))))))))))))).)))...)))))).))).))))......

Structure

----ac  a  g   gg      gUA   U           UGUUCAgagaggcua      c   g 
      cc gu gcc  ggagaa   CGG GAGCCUGUCAU               gauccu cuu  
      || || |||  ||||||   ||| |||||||||||               |||||| ||| u
      gg cg ugg  ccucuU   GCU CUCGGGUAGUA               CUAgga gag  
caccac  -  a   -a      GUG   C           ---------------      a   u 

Annotation confidence Not enough data

Genome context

chr18: 64384195-64384308 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from oar-mir-433

Mature oar-miR-433-5p

• Accession: MIMAT0019241
• Description: Ovis aries oar-miR-433-5p mature miRNA
• Sequence: 21 - UACGGUGAGCCUGUCAUUGUUCA - 43
• Evidence: experimental ; Illumina [1]

Mature oar-miR-433-3p

• Accession: MIMAT0019242
• Description: Ovis aries oar-miR-433-3p mature miRNA
• Sequence: 73 - AUCAUGAUGGGCUCCUCGGUGU - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662