Stem-loop oar-mir-370

Accession

MI0016915

Description

Ovis aries oar-mir-370 precursor miRNA

Literature search

5 open access papers mention oar-mir-370
(7 sentences)

Sequence

143 reads, 72 reads per million, 11 experiments

gucuggggcacaaggcagagaagcCAGGUCACGUCUCUGCAGUUACaccgcucucgaguGCCUGCUGGGGUGGAACCUGGUCUgucugucugucuagcaccacagc
..((((((((((.((((((.(.(((((((..((((((.((((...(((((....)).))).)))).))))))..))))))).).)))))))))...)).)).))).

Structure

gu   -  -  ---   a      g a       CA      U    UUA   -  c 
  cug gg gc   aca ggcaga a gcCAGGU  CGUCUC GCAG   Cac cg u
  ||| || ||   ||| |||||| | |||||||  |||||| ||||   ||| ||  
  gac cc cg   ugu cugucu U UGGUCCA  GUGGGG CGUC   Gug gc c
-c   a  a  auc   -      g C       AG      U    --C   a  u 

Annotation confidence Not enough data

Genome context

chr18: 64412683-64412788 [+]

Mature oar-miR-370-5p

• Accession: MIMAT0019243
• Description: Ovis aries oar-miR-370-5p mature miRNA
• Sequence: 25 - CAGGUCACGUCUCUGCAGUUAC - 46
• Evidence: experimental ; Illumina [1]

Mature oar-miR-370-3p

• Accession: MIMAT0019244
• Description: Ovis aries oar-miR-370-3p mature miRNA
• Sequence: 60 - GCCUGCUGGGGUGGAACCUGGUCU - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662