Stem-loop oar-mir-379

Accession

MI0016917

Description

Ovis aries oar-mir-379 precursor miRNA

Literature search

5 open access papers mention oar-mir-379
(17 sentences)

Sequence

3294 reads, 558 reads per million, 13 experiments

cugauucuggggucagcaccacuccacgguuccugcagagaUGGUAGACUAUGGAACGUAGGCugugugauuucugaccUAUGUAACAUGGUCCACUAACUcucaguauccaauccguccucgga
.......((((((.......)))))).((...(((.((((.((((.(((((((..((((((((.(........).).)))))))..))))))).)))).)))))))...))..((((....))))

Structure

cugauucuggggucagcaccacuccac  uuc   c    a    A       GA       - u ugu 
                           gg   cug agag UGGU GACUAUG  ACGUAGG C g   g
                           ||   ||| |||| |||| |||||||  ||||||| | |    
                           cc   gac ucUC AUCA CUGGUAC  UGUAUcc g c   a
-------------aggcuccugccuaa  uau   -    A    C       AA       a u uuu 

Annotation confidence High

Genome context

chr18: 64521250-64521374 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from oar-mir-379

Mature oar-miR-379-5p

• Accession: MIMAT0019247
• Description: Ovis aries oar-miR-379-5p mature miRNA
• Sequence: 42 - UGGUAGACUAUGGAACGUAGGC - 63
• Evidence: experimental ; Illumina [1], cloned [2]

Mature oar-miR-379-3p

• Accession: MIMAT0019248
• Description: Ovis aries oar-miR-379-3p mature miRNA
• Sequence: 80 - UAUGUAACAUGGUCCACUAACU - 101
• Evidence: experimental ; Illumina [1], cloned [2]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662


2. PubMed ID: 23269700
   MicroRNA in the ovine mammary gland during early pregnancy: spatial and temporal expression of miR-21, miR-205, and miR-200
   "Galio L, Droineau S, Yeboah P, Boudiaf H, Bouet S, Truchet S, Devinoy E"
   "Physiol Genomics (2013) 45:151-161