Stem-loop oar-mir-1197

Accession

MI0016922

Description

Ovis aries oar-mir-1197 precursor miRNA

Literature search

1 open access papers mention oar-mir-1197
(3 sentences)

Sequence

6478 reads, 19.0 reads per million, 118 experiments

gaggcgaggucggcaucccuuccugguauuugaagacgCGGUUGACCAUGGUGUGUACGcuuuauuuaugacgUAGGACACAUGGUCUACUUCUucucgauaucacaucuucgccuuggaagaccuucc
(((((((((..(...........(((((((.(((((...(((.(((((((.(((.(((((.........).))))..)))))))))).))))))))..))))))))..)))))))))((((....))))

Structure

------------         uc gcaucccuucc       -u     cgC   U       G   -G    - uuu 
            gaggcgagg  g           ugguauu  gaaga   GGU GACCAUG UGU  UACG c   a
            |||||||||  |           |||||||  |||||   ||| ||||||| |||  |||| |   u
            uuccgcuuc  c           acuauag  cuUCU   UCA CUGGUAC ACA  AUgc g   u
ccuuccagaagg         ua -----------       cu     ---   U       -   GG    a uau 

Annotation confidence Medium

Genome context

chr18: 64524697-64524825 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from oar-mir-1197

Mature oar-miR-1197-5p

• Accession: MIMAT0019257
• Description: Ovis aries oar-miR-1197-5p mature miRNA
• Sequence: 39 - CGGUUGACCAUGGUGUGUACG - 59
• Evidence: experimental ; Illumina [1]

Mature oar-miR-1197-3p

• Accession: MIMAT0019258
• Description: Ovis aries oar-miR-1197-3p mature miRNA
• Sequence: 74 - UAGGACACAUGGUCUACUUCU - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662