Stem-loop oar-mir-329b

Accession

MI0016925

Description

Ovis aries oar-mir-329b precursor miRNA

Literature search

6 open access papers mention oar-mir-329b
(12 sentences)

Sequence

1979 reads, 410 reads per million, 13 experiments

cacugguguucuggucaguguucacccaugguaccugaagaGAGGUUUUCUGGGUUUCUGUUUCuuuaaugaggaugaAACACACCUGGUUAACCUCUUUuccaguaucaaaucccaucuugaa
....((((..(........)..))))..((((((..(((((((((((..((((((...((((((.((......)).)))))).))))))..)))))))))))..))))))..............

Structure

cacugguguucuggucaguguucaccca      cu           UU      UUC      u  aa 
                            ugguac  gaagaGAGGUU  CUGGGU   UGUUUC uu  u
                            ||||||  |||||||||||  ||||||   |||||| ||   
                            acuaug  cuUUUCUCCAA  GGUCCA   ACAAag ag  g
--------------aaguucuacccuaa      ac           UU      --C      u  ga 

Annotation confidence Not enough data

Genome context

chr18: 64525872-64525995 [+]

Clustered miRNAs

14 other miRNAs are < 10 kb from oar-mir-329b

Mature oar-miR-329b-5p

• Accession: MIMAT0019263
• Description: Ovis aries oar-miR-329b-5p mature miRNA
• Sequence: 42 - GAGGUUUUCUGGGUUUCUGUUUC - 64
• Evidence: experimental ; Illumina [1]

Mature oar-miR-329b-3p

• Accession: MIMAT0019264
• Description: Ovis aries oar-miR-329b-3p mature miRNA
• Sequence: 79 - AACACACCUGGUUAACCUCUUU - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662