Stem-loop oar-mir-329a

Accession

MI0016926

Description

Ovis aries oar-mir-329a precursor miRNA

Literature search

6 open access papers mention oar-mir-329a
(16 sentences)

Sequence

2005 reads, 409 reads per million, 13 experiments

uguaauuggugguacuugaggaGAGGUUUUCUAGGUCUCCGUUUcuuucaugaggaugaAACACACCUGGUUAACCUUUUUuccaguaucagaucccaccuugg
.......(((((((((.(((((((((((..((((((....(((((.(((....))).)))))..))))))..))))))))))).)))).......)))))....

Structure

uguaauu     -------    u           UU      CUCC     u   a 
       ggugg       uacu gaggaGAGGUU  CUAGGU    GUUUc uuc u
       |||||       |||| |||||||||||  ||||||    ||||| |||  
       ccacc       auga cuUUUUUCCAA  GGUCCA    CAAag agg g
---gguu     cuagacu    c           UU      --CA     u   a 

Annotation confidence Not enough data

Genome context

chr18: 64526187-64526290 [+]

Clustered miRNAs

14 other miRNAs are < 10 kb from oar-mir-329a

Mature oar-miR-329a-5p

• Accession: MIMAT0019265
• Description: Ovis aries oar-miR-329a-5p mature miRNA
• Sequence: 23 - GAGGUUUUCUAGGUCUCCGUUU - 44
• Evidence: experimental ; Illumina [1]

Mature oar-miR-329a-3p

• Accession: MIMAT0019266
• Description: Ovis aries oar-miR-329a-3p mature miRNA
• Sequence: 60 - AACACACCUGGUUAACCUUUUU - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662