Stem-loop oar-mir-1193

Accession

MI0016928

Description

Ovis aries oar-mir-1193 precursor miRNA

Sequence

6 reads, 30 reads per million, 3 experiments

ccgcucuccaggguagcugagGGGAUGGUAGACCGGUGACGUGCacuucauuuaugaugUAGGUCACCCGUUUGACUAUCCaccagcacccaguccaucugug
..........((((.((((.(.(((((((((((.((((((.((((..(((....))))))).)))))).)))).))))))).)))))))))............

Structure

--ccgcucucca    a    a G       -    C      G    cu   u 
            gggu gcug g GGAUGGU AGAC GGUGAC UGCa  uca u
            |||| |||| | ||||||| |||| |||||| ||||  |||  
            ccca cgac c CCUAUCA UUUG CCACUG AUgu  agu u
gugucuaccuga    -    - a       G    C      G    --   a 

Annotation confidence Not enough data

Genome context

chr18: 64529620-64529722 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from oar-mir-1193

Mature oar-miR-1193-5p

• Accession: MIMAT0019269
• Description: Ovis aries oar-miR-1193-5p mature miRNA
• Sequence: 22 - GGGAUGGUAGACCGGUGACGUGC - 44
• Evidence: experimental ; Illumina [1]

Mature oar-miR-1193-3p

• Accession: MIMAT0019270
• Description: Ovis aries oar-miR-1193-3p mature miRNA
• Sequence: 60 - UAGGUCACCCGUUUGACUAUCC - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662