Stem-loop oar-mir-543

Accession

MI0016929

Description

Ovis aries oar-mir-543 precursor miRNA

Literature search

5 open access papers mention oar-mir-543
(17 sentences)

Sequence

903711 reads, 807.0 reads per million, 141 experiments

gcugagcugccgaaugauccugaccuguggugcuuaaggagAAGUUGCCCGUGUCUUUUUCGcuuuauaugugacgAAACAUUCGCGGUGCACUUCUUuuucaguauccaauucagccucgaa
((......)).....((..((((..((.((((((.((((((((((.(((((((....((((((.........).)))))....))))).)))))))))))).))))))))..))))..))...

Structure

gcugagcugccgaau  uc    cc  u      u          U  -     UCUU     - uuu 
               ga  cuga  ug ggugcu aaggagAAGU GC CCGUG    UUUCG c   a
               ||  ||||  || |||||| |||||||||| || |||||    ||||| |   u
               cu  gacu  ac cuauga uuuUUCUUCA CG GGCGC    AAAgc g   a
------------aag  cc    ua  -      c          -  U     UUAC     a ugu 

Annotation confidence High

Genome context

chr18: 64531404-64531526 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from oar-mir-543

Mature oar-miR-543-5p

• Accession: MIMAT0019271
• Description: Ovis aries oar-miR-543-5p mature miRNA
• Sequence: 42 - AAGUUGCCCGUGUCUUUUUCG - 62
• Evidence: experimental ; Illumina [1]

Mature oar-miR-543-3p

• Accession: MIMAT0019272
• Description: Ovis aries oar-miR-543-3p mature miRNA
• Sequence: 77 - AAACAUUCGCGGUGCACUUCUU - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662