Stem-loop oar-mir-543

Accession

MI0016929

Description

Ovis aries oar-mir-543 precursor miRNA

Literature search

1 open access papers mention oar-mir-543
(1 sentences)

Sequence

500 reads, 156 reads per million, 13 experiments

gcugagcugccgaaugauccugACCUGUGGUGCUUAAGGAGaaguugcccgugucuuuuucgcuuuauaugugacgAAACAUUCGCGGUGCACUUCUUUuucaguauccaauucagccucgaa
((......)).....((..((((..((.((((((.((((((((((.(((((((....((((((.........).)))))....))))).)))))))))))).))))))))..))))..))...

Structure

gcugagcugccgaau  uc    CC  U      U          u  -     ucuu     - uuu 
               ga  cugA  UG GGUGCU AAGGAGaagu gc ccgug    uuucg c   a
               ||  ||||  || |||||| |||||||||| || |||||    ||||| |   u
               cu  gacu  ac cuauga uuUUUCUUCA CG GGCGC    AAAgc g   a
------------aag  cc    ua  -      c          -  U     UUAC     a ugu 

Annotation confidence Not enough data

Genome context

chr18: 64531404-64531526 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from oar-mir-543

Mature oar-miR-543-5p

• Accession: MIMAT0019271
• Description: Ovis aries oar-miR-543-5p mature miRNA
• Sequence: 23 - ACCUGUGGUGCUUAAGGAG - 41
• Evidence: experimental ; Illumina [1]

Mature oar-miR-543-3p

• Accession: MIMAT0019272
• Description: Ovis aries oar-miR-543-3p mature miRNA
• Sequence: 77 - AAACAUUCGCGGUGCACUUCUUU - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662