Stem-loop oar-mir-495

Accession

MI0016930

Description

Ovis aries oar-mir-495 precursor miRNA

Literature search

1 open access papers mention oar-mir-495
(1 sentences)

Sequence

1507 reads, 313 reads per million, 13 experiments

gcacauccgugcccaucagggcugaccgcugguaccugagaAGAAGUCGCCCAUGUUCUUUUCGcuugauuugugucgAAACAAACAUGGUGCACUUCUUuuucggugucaaaucucagcgcgggg
((((....))))((....(.(((((....(((((((.((((((((((.(((((((((..((((((.........).)))))..))))))).)))))))))))).)))))))....))))).)..))

Structure

gcacauccgugc  auca g     ccgc       u          C  -       CU     - uug 
            cc    g gcuga    ugguacc gagaAGAAGU GC CCAUGUU  UUUCG c   a
            ||    | |||||    ||||||| |||||||||| || |||||||  ||||| |   u
            gg    c cgacu    acugugg uuuUUCUUCA CG GGUACAA  AAAgc g   u
------------  --gg g     cuaa       c          -  U       AC     u ugu 

Annotation confidence Not enough data

Genome context

chr18: 64532840-64532965 [+]

Clustered miRNAs

21 other miRNAs are < 10 kb from oar-mir-495

Mature oar-miR-495-5p

• Accession: MIMAT0019273
• Description: Ovis aries oar-miR-495-5p mature miRNA
• Sequence: 42 - AGAAGUCGCCCAUGUUCUUUUCG - 64
• Evidence: experimental ; Illumina [1]

Mature oar-miR-495-3p

• Accession: MIMAT0019274
• Description: Ovis aries oar-miR-495-3p mature miRNA
• Sequence: 79 - AAACAAACAUGGUGCACUUCUU - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662