miRBase entry: oar-mir-654

Stem-loop oar-mir-654

Accession

MI0016935

Description

Ovis aries oar-mir-654 precursor miRNA

Sequence

gagcccccaaccuggguuaguggAAAGGUGGUGGGCUGCGGAGCAUGugcuuccuucgcgucaUAUGUCUGCUGACCAUCACCUUUAgagcccucucgcugagga
.(((((.......))))).((..(((((((((((...(((((.(((((((.........).)))))))))))...)))))))))))...))((((.....)))).

Structure

gagcccccaaccuggguua  -gg           GCU     G      - uuc 
                   gu   AAAGGUGGUGG   GCGGA CAUGug c   c
                   ||   |||||||||||   ||||| |||||| |   u
                   cg   UUUCCACUACC   CGUCU GUAUac g   u
-----aggagucgcucucc  agA           AGU     -      u cgc

Annotation confidence Not enough data

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Genome context

chr18: 64538374-64538478 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from oar-mir-654

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oar-miR-654-5p

Accession	MIMAT0019282
Description	Ovis aries oar-miR-654-5p mature miRNA
Sequence	24 - AAAGGUGGUGGGCUGCGGAGCAUG - 47
Evidence	experimental Illumina [1]

Mature oar-miR-654-3p

Accession	MIMAT0019283
Description	Ovis aries oar-miR-654-3p mature miRNA
Sequence	64 - UAUGUCUGCUGACCAUCACCUUUA - 87
Evidence	experimental Illumina [1]

References

PubMed ID: 20944086
Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
"Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
"Genome Res (2010) 20:1651-1662