Stem-loop oar-mir-381

Accession

MI0016940

Description

Ovis aries oar-mir-381 precursor miRNA

Literature search

4 open access papers mention oar-mir-381
(7 sentences)

Sequence

6465960 reads, 4738.0 reads per million, 136 experiments

agcgauggaccugcccaaugcuacuacuguuugguacuuaaAGCGAGGUUGCCCUUUGUAUauucgguuuuuugacgcagaaUAUACAAGGGCAAGCUCUCUGUgaguaucaaacccuggacccaguc
((((.(((......))).)))).(((..((((((((((((.((.(((.((((((((.((((((((((((....))).).)))))))))))))))).))).)).))))))))))))..)))........

Structure

agcgauggaccugcccaaugcua   cu            a  C   G        U        - -   u 
                       cua  guuugguacuua AG GAG UUGCCCUU GUAUauuc g guu u
                       |||  |||||||||||| || ||| |||||||| |||||||| | |||  
                       ggu  caaacuaugagU UC CUC AACGGGAA CAUAUaag c cag u
---------------cugaccca   cc            G  U   G        -        a g   u 

Annotation confidence High

Genome context

chr18: 64542580-64542707 [+]

Clustered miRNAs

18 other miRNAs are < 10 kb from oar-mir-381

Mature oar-miR-381-5p

• Accession: MIMAT0019292
• Description: Ovis aries oar-miR-381-5p mature miRNA
• Sequence: 42 - AGCGAGGUUGCCCUUUGUAU - 61
• Evidence: experimental ; Illumina [1]

Mature oar-miR-381-3p

• Accession: MIMAT0019293
• Description: Ovis aries oar-miR-381-3p mature miRNA
• Sequence: 83 - UAUACAAGGGCAAGCUCUCUGU - 104
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662