Stem-loop oar-mir-487a

Accession

MI0016946

Description

Ovis aries oar-mir-487a precursor miRNA

Literature search

1 open access papers mention oar-mir-487a
(4 sentences)

Sequence

421 reads, 175 reads per million, 13 experiments

guuagccuuugguacuugaagaGUGGCUAUCCCUGCUGUGUUCGcuguauuuaugacgaAUCAUACAGGGACAUCCAGUUUuucaguaucaaauacugcucug
..(((..(((((((((.(((((.(((...((((((.(((((((((.........).)))).))))))))))...))).))))).)))))))))..))).....

Structure

---gu   cc         u     G   CUA      C    -    - ugu 
     uag  uuugguacu gaaga UGG   UCCCUG UGUG UUCG c   a
     |||  ||||||||| ||||| |||   |||||| |||| |||| |   u
     guc  aaacuauga uuUUU ACC   AGGGAC AUAC Aagc g   u
gucuc   au         c     G   UAC      -    U    a uau 

Annotation confidence High

Genome context

chr18: 64548818-64548920 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from oar-mir-487a

Mature oar-miR-487a-5p

• Accession: MIMAT0019304
• Description: Ovis aries oar-miR-487a-5p mature miRNA
• Sequence: 23 - GUGGCUAUCCCUGCUGUGUUCG - 44
• Evidence: experimental ; Illumina [1]

Mature oar-miR-487a-3p

• Accession: MIMAT0019305
• Description: Ovis aries oar-miR-487a-3p mature miRNA
• Sequence: 60 - AUCAUACAGGGACAUCCAGUUU - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662