Stem-loop oar-mir-154b

Accession

MI0016953

Description

Ovis aries oar-mir-154b precursor miRNA

Literature search

2 open access papers mention oar-mir-154b
(5 sentences)

Sequence

3668 reads, 659 reads per million, 13 experiments

agagauacuuggugguacuugaagAGAGGUCUUCCAUGGUGCAUUCGcuuuauucuuugacgAAUCAUACAUGGUUGACCUUUUUuuagguaucaaaucuggccuugaa
.(((........(((((((((((((((((((..((((((((.((((((..........).)))))))).)))))..)))))))))))))))))))........)))...

Structure

--a   auacuugg                   UU     -   C     - uuua 
   gag        ugguacuugaagAGAGGUC  CCAUG GUG AUUCG c    u
   |||        |||||||||||||||||||  ||||| ||| ||||| |     
   uuc        acuauggauuUUUUUCCAG  GGUAC UAC UAAgc g    u
aag   cggucuaa                   UU     A   -     a uuuc 

Annotation confidence High

Genome context

chr18: 64557232-64557340 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from oar-mir-154b

Mature oar-miR-154b-5p

• Accession: MIMAT0019317
• Description: Ovis aries oar-miR-154b-5p mature miRNA
• Sequence: 25 - AGAGGUCUUCCAUGGUGCAUUCG - 47
• Evidence: experimental ; Illumina [1]

Mature oar-miR-154b-3p

• Accession: MIMAT0019318
• Description: Ovis aries oar-miR-154b-3p mature miRNA
• Sequence: 63 - AAUCAUACAUGGUUGACCUUUUU - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662