Stem-loop oar-mir-377

Accession

MI0016955

Description

Ovis aries oar-mir-377 precursor miRNA

Literature search

1 open access papers mention oar-mir-377
(2 sentences)

Sequence

317 reads, 110 reads per million, 13 experiments

agagguaucuuggugcucaggcccugcugacguuugauccuugagcAGAGGUUGCCUUUGGUGAAUUCgcuuuauuuauguugaAUCACACAAAGGCAACUUUCGUuugaguaucaaauccugcuuggga
...(((((....)))))....(((.((....(((((((.(((((((.(((((((((((((((((.(((((.........).)))))))).))))))))))))).))))))).)))))))...))..))).

Structure

agagguaucuuggugcucagg   -u  ugac       c       A             -    A    - uuu 
                     ccc  gc    guuugau cuugagc GAGGUUGCCUUUG GUGA UUCg c   a
                     |||  ||    ||||||| ||||||| ||||||||||||| |||| |||| |   u
                     ggg  cg    uaaacua gaguuUG UUUCAACGGAAAC CACU Aagu g   u
--------------------a   uu  -ucc       u       C             A    -    u uau 

Annotation confidence High

Genome context

chr18: 64559316-64559445 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from oar-mir-377

Mature oar-miR-377-5p

• Accession: MIMAT0019321
• Description: Ovis aries oar-miR-377-5p mature miRNA
• Sequence: 47 - AGAGGUUGCCUUUGGUGAAUUC - 68
• Evidence: experimental ; Illumina [1]

Mature oar-miR-377-3p

• Accession: MIMAT0019322
• Description: Ovis aries oar-miR-377-3p mature miRNA
• Sequence: 85 - AUCACACAAAGGCAACUUUCGU - 106
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662