Stem-loop oar-mir-409

Accession

MI0016958

Description

Ovis aries oar-mir-409 precursor miRNA

Sequence

8071 reads, 1476 reads per million, 13 experiments

ccucuccaugguacgcggggagAGGUUACCCGAGCAACUUUGCAUcuggacgaCGAAUGUUGCUCGGUGAACCCCUuuucgguaucaaaauccaucagaga
.((((...((((((.(((((((.((((..((((((((((((((........).)))).)))))))))..)))).))))))))))))).........)))).

Structure

c    ------cca      g       A    AC         -    - AUc 
 cucu         ugguac cggggag GGUU  CCGAGCAAC UUUG C   u
 ||||         |||||| ||||||| ||||  ||||||||| |||| |    
 gaga         acuaug gcuuuUC CCAA  GGCUCGUUG AAGC g   g
a    cuaccuaaa      -       C    GU         U    a cag 

Annotation confidence High

Genome context

chr18: 64562168-64562268 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from oar-mir-409

Mature oar-miR-409-5p

• Accession: MIMAT0019327
• Description: Ovis aries oar-miR-409-5p mature miRNA
• Sequence: 23 - AGGUUACCCGAGCAACUUUGCAU - 45
• Evidence: experimental ; Illumina [1]

Mature oar-miR-409-3p

• Accession: MIMAT0019328
• Description: Ovis aries oar-miR-409-3p mature miRNA
• Sequence: 54 - CGAAUGUUGCUCGGUGAACCCCU - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662