Stem-loop oar-mir-412

Accession

MI0016959

Description

Ovis aries oar-mir-412 precursor miRNA

Literature search

1 open access papers mention oar-mir-412
(1 sentences)

Sequence

509 reads, 191 reads per million, 12 experiments

agggaagaacgucaguaccagcaaccacucugggguacaggacggaUGGUCGACCAGUUGGAAAGUAAUuguuucuaauguaCUUCACCUGGUCCACUAGCUguccguacccacugcagccugc
..........(.((((..(((........)))((((((.((((((.((((.((((((.(((..((((((((....)))).))))))).)))))).)))).))))))))))))))))).......

Structure

agggaagaac u    accagcaaccacucug      a      a    C      U   AA    -    u 
          g cagu                ggguac ggacgg UGGU GACCAG UGG  AGUA AUug u
          | ||||                |||||| |||||| |||| |||||| |||  |||| ||||  
          c guca                cccaug ccugUC AUCA CUGGUC ACU  UCau uaau u
---cguccga -    ----------------      -      G    C      C   --    g    c 

Annotation confidence High

Genome context

chr18: 64562295-64562418 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from oar-mir-412

Mature oar-miR-412-3p

• Accession: MIMAT0019329
• Description: Ovis aries oar-miR-412-3p mature miRNA
• Sequence: 47 - UGGUCGACCAGUUGGAAAGUAAU - 69
• Evidence: experimental ; Illumina [1]

Mature oar-miR-412-5p

• Accession: MIMAT0019330
• Description: Ovis aries oar-miR-412-5p mature miRNA
• Sequence: 83 - CUUCACCUGGUCCACUAGCU - 102
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662