Stem-loop oar-mir-323c

Accession

MI0016962

Description

Ovis aries oar-mir-323c precursor miRNA

Literature search

2 open access papers mention oar-mir-323c
(3 sentences)

Sequence

18042 reads, 24.0 reads per million, 138 experiments

gcgugcugcugcacuugaugcuugaggagAGGUUGCCCGUGGCCGGUUCGcauucuucaugucgCACAAUACACGGUCGGCCUCUcuucgguaucaaaucccaccuugca
..((((....))))((((((((.((((((((((((.(((((....((.(((((.....))).)).))....))))).)))))))))))))))))))).............

Structure

gcgugcugcugcac        u            C     GCCG  U  -   u 
              uugaugcu gaggagAGGUUG CCGUG    GU CG cau c
              |||||||| |||||||||||| |||||    || || ||| u
              aacuaugg cuucUCUCCGGC GGCAC    CA gc gua u
-acguuccacccua        -            U     AUAA  C  u   c 

Annotation confidence Not enough data

Genome context

chr18: 64563301-64563410 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from oar-mir-323c

Mature oar-miR-323c-5p

• Accession: MIMAT0052514
• Description: Ovis aries oar-miR-323c-5p mature miRNA
• Sequence: 30 - AGGUUGCCCGUGGCCGGUUCG - 50
• Evidence: experimental ; Illumina [1]

Mature oar-miR-323c-3p

• Accession: MIMAT0019335
• Description: Ovis aries oar-miR-323c-3p mature miRNA
• Sequence: 65 - CACAAUACACGGUCGGCCUCU - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662