miRBase entry: mmu-mir-3965

Stem-loop mmu-mir-3965


Accession
MI0016972
Symbol
MGI: Mir3965
Description
Mus musculus mmu-mir-3965 precursor miRNA

Literature search
1 open access papers mention mmu-mir-3965
(2 sentences)

Sequence

501 reads, 36 reads per million, 18 experiments
gggaagucagagagcugcagcugagugcacagaaggcugcUGCUUAUCAGCCUGAUGUUcaaggcuugc
.(.(((((...((((..(((((((..((((((....))).)))...)))).)))..))))..))))).)

Structure
g g     aga    ug   -    -gu   -   a 
 g aaguc   gagc  cag cuga   gca cag a
 | |||||   ||||  ||| ||||   ||| |||  
 c uucgg   cUUG  GUC GACU   CGU guc g
- g     -aa    UA   C    AUU   c   g 


Annotation confidence Not enough data
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Genome context
chr5: 134326454-134326522 [+]

Database links

Mature mmu-miR-3965

Accession MIMAT0019347
Description Mus musculus mmu-miR-3965 mature miRNA
Sequence 41 - UGCUUAUCAGCCUGAUGUU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20935160
    Next-generation sequencing identifies the natural killer cell microRNA transcriptome
    "Fehniger TA, Wylie T, Germino E, Leong JW, Magrini VJ, Koul S, Keppel CR, Schneider SE, Koboldt DC, Sullivan RP, Heinz ME, Crosby SD, Nagarajan R, Ramsingh G, Link DC, Ley TJ, Mardis ER"
    "Genome Res (2010) 20:1590-1604