Stem-loop pma-mir-17b

Accession

MI0017015

Description

Petromyzon marinus pma-mir-17b precursor miRNA

Sequence

cugugggcgugcauuguUAAAGUGCAGAUAGUGGUAGUUgguccuaaaaaugacagcuacucuauuuacacuuuaaacacugugcggucccaau
...((((((((((.((((((((((.((((((.((((((((.((........)))))))))))))))).)))))).)))).))))))..))))..

Structure

cug    --      u    -      C      U        g  cua 
   uggg  cgugca uguU AAAGUG AGAUAG GGUAGUUg uc   a
   ||||  |||||| |||| |||||| |||||| |||||||| ||    
   accc  gcgugu acaa uuucac uuuauc ucaucgac ag   a
-ua    ug      c    a      a      -        -  uaa 

Annotation confidence Not enough data

Genome context

GL478379.1: 404297-404390 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from pma-mir-17b

Mature pma-miR-17b

• Accession: MIMAT0019385
• Description: Petromyzon marinus pma-miR-17b mature miRNA
• Sequence: 18 - UAAAGUGCAGAUAGUGGUAGUU - 39
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383