Stem-loop pma-mir-17c

Accession

MI0017016

Description

Petromyzon marinus pma-mir-17c precursor miRNA

Sequence

gaaugagcgcgcgggggAAAAGUGCAAAUAGUGGUAGGUagugaucacugccgucugccuacuccauuugcauuuuggccuccgugcgucucgccg
....(((((((((((((.(((((((((((.(.(((((((((((........)).))))))))).))))))))))))..)))))))))).)))....

Structure

gaau   -          -A           A U         -  auc 
    gag cgcgcggggg  AAAGUGCAAAU G GGUAGGUag ug   a
    ||| ||||||||||  ||||||||||| | ||||||||| ||    
    cuc gcgugccucc  uuuuacguuua c ucauccguc gc   c
gccg   u          gg           - c         u  cgu 

Annotation confidence Not enough data

Genome context

ref|NC_046132.1|: 1979748-1979843 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from pma-mir-17c

Mature pma-miR-17c-5p

• Accession: MIMAT0019386
• Description: Petromyzon marinus pma-miR-17c-5p mature miRNA
• Sequence: 18 - AAAAGUGCAAAUAGUGGUAGGU - 39
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383