miRBase entry: pma-mir-100c

Stem-loop pma-mir-100c

Accession

MI0017054

Description

Petromyzon marinus pma-mir-100c precursor miRNA

Sequence

gcccugccgacacaGACCCGUAGACACGAGCUUGUGcaaaacucccaccacaaguucggaucuacggguuuguggcgaccggcggaau
...((((((.((((((((((((((..((((((((((............))))))))))..)))))))))))))).....))))))...

Structure

gcc      ----a              CA          caaaa 
   cugccg     cacaGACCCGUAGA  CGAGCUUGUG     c
   ||||||     ||||||||||||||  ||||||||||      
   ggcggc     guguuugggcaucu  gcuugaacac     u
uaa      cagcg              ag          caccc

Annotation confidence Not enough data

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Genome context

GL476441.1: 180229-180316 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pma-mir-100c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pma-miR-100c

Accession	MIMAT0019440
Description	Petromyzon marinus pma-miR-100c mature miRNA
Sequence	15 - GACCCGUAGACACGAGCUUGUG - 36
Evidence	experimental 454 [1]

References

PubMed ID: 20959416
microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
"Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
"Proc Natl Acad Sci U S A (2010) 107:19379-19383