Stem-loop pma-mir-130c-1

Accession

MI0017067

Description

Petromyzon marinus pma-mir-130c-1 precursor miRNA

Sequence

uuucccccgucgcucgcuuuuuuacuguugcacuccuguuggaugacgaugagCAGUGCAACAUAUAAUAGGGCACgcggcggcgggaga
(((((((((((((..(((((.(((.(((((((((.((((((.....)))).)).)))))))))..))).)))))..))))))).))))))

Structure

      -       uc     u   -c         c  -    g 
uuuccc ccgucgc  gcuuu uua  uguugcacu cu guug a
|||||| |||||||  ||||| |||  ||||||||| || |||| u
agaggg ggcggcg  CGGGA AAU  ACAACGUGA ga uagc g
      c       CA     U   AU         C  g    a 

Annotation confidence Not enough data

Genome context

ref|NW_022638183.1|: 735195-735284 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pma-mir-130c-1

Mature pma-miR-130c-3p

• Accession: MIMAT0019457
• Description: Petromyzon marinus pma-miR-130c-3p mature miRNA
• Sequence: 54 - CAGUGCAACAUAUAAUAGGGCAC - 76
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383