Stem-loop pma-mir-155

Accession

MI0017088

Description

Petromyzon marinus pma-mir-155 precursor miRNA

Literature search

1 open access papers mention pma-mir-155
(1 sentences)

Sequence

ugugucgaggUUAAUGCUAUCGUUGAUGGGGUUccgugcauugcucaguggcccugccaaaaguagcauuguccacgccaca
((((.((.((.(((((((((..(((.(((((((.(..((...))...).))))))).)))..))))))))).)).)).))))

Structure

    u  a  U         CG   A       c -gu  a 
ugug cg gg UAAUGCUAU  UUG UGGGGUU c   gc  
|||| || || |||||||||  ||| ||||||| |   || u
acac gc cc guuacgaug  aac gucccgg g   cg  
    c  a  u         aa   c       u acu  u 

Annotation confidence Not enough data

Genome context

ref|NC_046100.1|: 1740980-1741060 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pma-mir-155

Mature pma-miR-155-5p

• Accession: MIMAT0019485
• Description: Petromyzon marinus pma-miR-155-5p mature miRNA
• Sequence: 11 - UUAAUGCUAUCGUUGAUGGGGUU - 33
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383