Stem-loop pma-mir-194

Accession

MI0017098

Description

Petromyzon marinus pma-mir-194 precursor miRNA

Literature search

1 open access papers mention pma-mir-194
(6 sentences)

Sequence

cacagugugcaucaggUGUAACAGCAACUCCAUGUGGAUguuccaucgcuccCAGUGGAGUUACUGUUACUUUUgauggacauucac
...(((((.(((((((.(((((((.((((((((..(((.((......)))))..)))))))).))))))).))))))).)))))...

Structure

cac     g       U       C        GU   U  uc 
   agugu caucagg GUAACAG AACUCCAU  GGA gu  c
   ||||| ||||||| ||||||| ||||||||  ||| ||   
   uuaca guagUUU CAUUGUC UUGAGGUG  ccu cg  a
cac     g       U       A        AC   -  cu 

Annotation confidence Not enough data

Genome context

ref|NC_046074.1|: 5107944-5108030 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pma-mir-194

Mature pma-miR-194-5p

• Accession: MIMAT0019500
• Description: Petromyzon marinus pma-miR-194-5p mature miRNA
• Sequence: 17 - UGUAACAGCAACUCCAUGUGGAU - 39
• Evidence: experimental ; 454 [1]

Mature pma-miR-194-3p

• Accession: MIMAT0019501
• Description: Petromyzon marinus pma-miR-194-3p mature miRNA
• Sequence: 53 - CAGUGGAGUUACUGUUACUUUU - 74
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383