Stem-loop pma-mir-208

Accession

MI0017109

Description

Petromyzon marinus pma-mir-208 precursor miRNA

Sequence

gaaguggcgcacgggcGUGCUCCUCGCUCGUUUUAUUUuggaaucaaaaguuaaagAUAAGACGAGCAAGUAGUGGGUccgagcgccgcacg
...(((((((.(((((.((((.((.((((((((((((((..............)))))))))))))).)).)))).))))).)))))))...

Structure

gaa       a     G    C  C              ggaauc 
   guggcgc cgggc UGCU CU GCUCGUUUUAUUUu      a
   ||||||| ||||| |||| || ||||||||||||||       
   cgccgcg gccUG GUGA GA CGAGCAGAAUAgaa      a
gca       a     G    U  A              auugaa 

Annotation confidence Low

Genome context

GL478284.1: 33837-33928 [+]

Mature pma-miR-208-5p

• Accession: MIMAT0019520
• Description: Petromyzon marinus pma-miR-208-5p mature miRNA
• Sequence: 17 - GUGCUCCUCGCUCGUUUUAUUU - 38
• Evidence: experimental ; 454 [1]

Mature pma-miR-208-3p

• Accession: MIMAT0019521
• Description: Petromyzon marinus pma-miR-208-3p mature miRNA
• Sequence: 57 - AUAAGACGAGCAAGUAGUGGGU - 78
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383