Stem-loop pma-let-7c

Accession

MI0017149

Description

Petromyzon marinus pma-let-7c precursor miRNA

Literature search

1 open access papers mention pma-let-7c
(4 sentences)

Sequence

ccggcucgcggggUGAGGUAGUAGAUUGUAUGGUUuuagggucacacccucgguugggagauaacuaugcaaucuacugucuuucccgcgggugcg
.((((((((((((.(((((((((((((((((((((.....(((...(((......))).)))))))))))))))))))))))))))))))))).))

Structure

c  -          U                     uuagg   aca   uc 
 cg gcucgcgggg GAGGUAGUAGAUUGUAUGGUU     guc   ccc  g
 || |||||||||| |||||||||||||||||||||     |||   |||   
 gc ugggcgcccu uucugucaucuaacguaucaa     uag   ggg  g
-  g          -                     -----   --a   uu 

Annotation confidence Not enough data

Genome context

ref|NC_046116.1|: 8594927-8595022 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pma-let-7c

Mature pma-let-7c-5p

• Accession: MIMAT0019567
• Description: Petromyzon marinus pma-let-7c-5p mature miRNA
• Sequence: 14 - UGAGGUAGUAGAUUGUAUGGUU - 35
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383