Stem-loop osa-MIR812k

Accession

MI0017245

Description

Oryza sativa osa-MIR812k precursor miRNA

Literature search

9 open access papers mention osa-MIR812k
(16 sentences)

Sequence

371255 reads, 1302.0 reads per million, 142 experiments

cuccguuucauaauaagugcagccaugaguuuccgcgcucaauUUUGAUCGUCCGUCUUAUUUGAaauuuuuuuauaauuagcauuuuuguuguuaugagaugauaaaacaugaauaguacuuuacuugugacuuauguuuuuaaauuuuuucaaaaaauuuuuAAUAAGACGAACGGUUAAAguuggacgcggaaaaccauggcuacacuuauuuugagacggag
((((((((((.((((((((.(((((((..((((((((.((((((((((((((.(((((((((.((((((((((((((((.((((....))))))))))((((...(((((((((....(((.......)))..)))))))))...))))....)))))))))).))))))))).)))))))))))))).))))))))..))))))).)))))))).))))))))))

Structure

          u        c       ag        c              C         U          uauaauuagcauuuuuguuguuaug    gau         auag   uu 
cuccguuuca aauaagug agccaug  uuuccgcg ucaauUUUGAUCGU CGUCUUAUU GAaauuuuuu                         agau   aaaacauga    uac  u
|||||||||| |||||||| |||||||  |||||||| |||||||||||||| ||||||||| ||||||||||                         ||||   |||||||||    |||  a
gaggcagagu uuauucac ucgguac  aaaggcgc gguugAAAUUGGCA GCAGAAUAA uuuuaaaaaa                         uuua   uuuuguauu    gug  c
          u        a       ca        a              A         u          ---------------------cuuu    aau         --ca   uu 

Annotation confidence Medium

Genome context

1: 37983959-37984184 [+]

Mature osa-miR812k-5p

• Accession: MIMAT0056162
• Description: Oryza sativa osa-miR812k-5p mature miRNA
• Sequence: 44 - UUUGAUCGUCCGUCUUAUUUGA - 65
• Evidence: experimental ; unknown

Mature osa-miR812k-3p

• Accession: MIMAT0019666
• Description: Oryza sativa osa-miR812k-3p mature miRNA
• Sequence: 165 - AAUAAGACGAACGGUUAAA - 183
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21113019
   Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)
   "Li T, Li H, Zhang YX, Liu JY"
   "Nucleic Acids Res (2011) 39:2821-2833