Stem-loop osa-MIR812k

Accession

MI0017245

Description

Oryza sativa osa-MIR812k precursor miRNA

Literature search

9 open access papers mention osa-MIR812k
(16 sentences)

Sequence

5499 reads, 3790 reads per million, 2 experiments

cuccguuucauaauaagugcagccaugaguuuccgcgcucaauuuugaucguccgucuuauuugaaauuuuuuuauaauuagcauuuuuguuguuaugagaugauaaaacaugaauaguacuuuacuugugacuuauguuuuuaaauuuuuucaaaaaauuuuuaauaagACGAACGGUUAAAGUUGGACGCGGaaaaccauggcuacacuuauuuugagacggag
((((((((((.((((((((.(((((((..((((((((.((((((((((((((.(((((((((.((((((((((((((((.((((....))))))))))((((...(((((((((....(((.......)))..)))))))))...))))....)))))))))).))))))))).)))))))))))))).))))))))..))))))).)))))))).))))))))))

Structure

          u        c       ag        c              c         u          uauaauuagcauuuuuguuguuaug    gau         auag   uu 
cuccguuuca aauaagug agccaug  uuuccgcg ucaauuuugaucgu cgucuuauu gaaauuuuuu                         agau   aaaacauga    uac  u
|||||||||| |||||||| |||||||  |||||||| |||||||||||||| ||||||||| ||||||||||                         ||||   |||||||||    |||  a
gaggcagagu uuauucac ucgguac  aaaGGCGC GGUUGAAAUUGGCA GCAgaauaa uuuuaaaaaa                         uuua   uuuuguauu    gug  c
          u        a       ca        A              A         u          ---------------------cuuu    aau         --ca   uu 

Annotation confidence Not enough data

Genome context

Unknown

Mature osa-miR812k

• Accession: MIMAT0019666
• Description: Oryza sativa osa-miR812k mature miRNA
• Sequence: 171 - ACGAACGGUUAAAGUUGGACGCGG - 194
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21113019
   Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)
   "Li T, Li H, Zhang YX, Liu JY"
   "Nucleic Acids Res (2011) 39:2821-2833