Dead hairpin entry

Stem-loop osa-MIR812k

Accession

MI0017245

Description

Oryza sativa osa-MIR812k precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

9 open access papers mention osa-MIR812k
(16 sentences)

Sequence

371255 reads, 1302.0 reads per million, 142 experiments

cuccguuucauaauaagugcagccaugaguuuccgcgcucaauUUUGAUCGUCCGUCUUAUUUGAaauuuuuuuauaauuagcauuuuuguuguuaugagaugauaaaacaugaauaguacuuuacuugugacuuauguuuuuaaauuuuuucaaaaaauuuuuAAUAAGACGAACGGUUAAAguuggacgcggaaaaccauggcuacacuuauuuugagacggag
((((((((((.((((((((.(((((((..((((((((.((((((((((((((.(((((((((.((((((((((((((((.((((....))))))))))((((...(((((((((....(((.......)))..)))))))))...))))....)))))))))).))))))))).)))))))))))))).))))))))..))))))).)))))))).))))))))))

Structure

          u        c       ag        c              C         U          uauaauuagcauuuuuguuguuaug    gau         auag   uu 
cuccguuuca aauaagug agccaug  uuuccgcg ucaauUUUGAUCGU CGUCUUAUU GAaauuuuuu                         agau   aaaacauga    uac  u
|||||||||| |||||||| |||||||  |||||||| |||||||||||||| ||||||||| ||||||||||                         ||||   |||||||||    |||  a
gaggcagagu uuauucac ucgguac  aaaggcgc gguugAAAUUGGCA GCAGAAUAA uuuuaaaaaa                         uuua   uuuuguauu    gug  c
          u        a       ca        a              A         u          ---------------------cuuu    aau         --ca   uu