Dead hairpin entry

Stem-loop osa-MIR812l

Accession

MI0017246

Description

Oryza sativa osa-MIR812l precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

9 open access papers mention osa-MIR812l
(15 sentences)

Sequence

171185 reads, 716.0 reads per million, 142 experiments

aguacuuccuccguccuauuuuaagugcaaccauauauuuucguauucaauUUUGAUCGUUCGUCUUAUUUuaauuuuuuuguaauuaauauuuuuguuguuauaagaugauaaaacaugcauaguauuuuacgcgugacuuauguuuuaaauuuuuucuaaaauuuuuuuaaAUAAGACGAACGGUUAAAGUUggacgcggaaaauuauggaugcacuuaaagugggauggagggaguauu
.((((((((((((((((((((((((((((.(((((..(((((((.((((((((((((((((((((((((((..(((.(((((((((.((((....))))))))))))).)))....(((((.(((....))).)))))...........(((((((....)))))))....)))))))))))))))))))))))))).)))))))..))))).)))))))))))))))))))))))))))).

Structure

a                            a     ua       a                          ---------------------------------------------------------ua   u         u    u 
 guacuuccuccguccuauuuuaagugca ccaua  uuuucgu uucaauUUUGAUCGUUCGUCUUAUUU                                                           auu uuuuguaau aaua u
 |||||||||||||||||||||||||||| |||||  ||||||| ||||||||||||||||||||||||||                                                           ||| ||||||||| ||||  
 uaugagggagguagggugaaauucacgu gguau  aaaggcg aggUUGAAAUUGGCAAGCAGAAUAaa                                                           uag agaauauug uugu u
u                            a     ua       c                          uuuuuuuaaaaucuuuuuuaaauuuuguauucagugcgcauuuuaugauacguacaaaa   u         -    u