Stem-loop osa-MIR812l

Accession

MI0017246

Description

Oryza sativa osa-MIR812l precursor miRNA

Literature search

9 open access papers mention osa-MIR812l
(15 sentences)

Sequence

171185 reads, 716.0 reads per million, 142 experiments

aguacuuccuccguccuauuuuaagugcaaccauauauuuucguauucaauUUUGAUCGUUCGUCUUAUUUuaauuuuuuuguaauuaauauuuuuguuguuauaagaugauaaaacaugcauaguauuuuacgcgugacuuauguuuuaaauuuuuucuaaaauuuuuuuaaAUAAGACGAACGGUUAAAGUUggacgcggaaaauuauggaugcacuuaaagugggauggagggaguauu
.((((((((((((((((((((((((((((.(((((..(((((((.((((((((((((((((((((((((((..(((.(((((((((.((((....))))))))))))).)))....(((((.(((....))).)))))...........(((((((....)))))))....)))))))))))))))))))))))))).)))))))..))))).)))))))))))))))))))))))))))).

Structure

a                            a     ua       a                          ---------------------------------------------------------ua   u         u    u 
 guacuuccuccguccuauuuuaagugca ccaua  uuuucgu uucaauUUUGAUCGUUCGUCUUAUUU                                                           auu uuuuguaau aaua u
 |||||||||||||||||||||||||||| |||||  ||||||| ||||||||||||||||||||||||||                                                           ||| ||||||||| ||||  
 uaugagggagguagggugaaauucacgu gguau  aaaggcg aggUUGAAAUUGGCAAGCAGAAUAaa                                                           uag agaauauug uugu u
u                            a     ua       c                          uuuuuuuaaaaucuuuuuuaaauuuuguauucagugcgcauuuuaugauacguacaaaa   u         -    u 

Annotation confidence Medium

Genome context

Unknown

Mature osa-miR812l-5p

• Accession: MIMAT0056163
• Description: Oryza sativa osa-miR812l-5p mature miRNA
• Sequence: 52 - UUUGAUCGUUCGUCUUAUUU - 71
• Evidence: experimental ; unknown

Mature osa-miR812l-3p

• Accession: MIMAT0019667
• Description: Oryza sativa osa-miR812l-3p mature miRNA
• Sequence: 174 - AUAAGACGAACGGUUAAAGUU - 194
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21113019
   Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)
   "Li T, Li H, Zhang YX, Liu JY"
   "Nucleic Acids Res (2011) 39:2821-2833