Dead hairpin entry

Stem-loop osa-MIR812n

Accession

MI0017254

Description

Oryza sativa osa-MIR812n precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

10 open access papers mention osa-MIR812n
(16 sentences)

Sequence

428482 reads, 1149.0 reads per million, 142 experiments

cuuAAGUGCAGCCAUGAGUUUCCGUGCCcaacuuuaucguucgucuuauuugaaauuuuuuuaugauuaguauuucuauuguuauuagaugauaaaacaugaauaguacuuuaugugugacuuauguuuuuauuguuuuuaaaaaaaauucaaauaacacagacgaucaaaguugggcACGGAAAAUCAUGGCUGCACUUAAa
.((((((((((((((((.(((((((((((((((((((((((.((.(((((((((.((((((((.((.(((((..((((.......))))....(((((((((...((((.....))))...)))))))))))))).)).)))))))).))))))))).)).)))))).))))))))))))))))).)))))))))))))))).

Structure

c                G                 -      c  c         a        u  u     uuucuauuguuauuagaugau         aua    u 
 uuAAGUGCAGCCAUGA UUUCCGUGCCcaacuuu aucguu gu uuauuugaa uuuuuuua ga uagua                     aaaacauga   guac u
 |||||||||||||||| ||||||||||||||||| |||||| || ||||||||| |||||||| || |||||                     |||||||||   |||| u
 AAUUCACGUCGGUACU AAAGGCAcggguugaaa uagcag ca aauaaacuu aaaaaaau uu guuau                     uuuuguauu   ugug a
a                A                 c      a  c         a        u  u     ---------------------         cag    u