Stem-loop osa-MIR812o

Accession

MI0017255

Description

Oryza sativa osa-MIR812o precursor miRNA

Literature search

9 open access papers mention osa-MIR812o
(15 sentences)

Sequence

219 reads, 148 reads per million, 2 experiments

gguuuuCGUGUUCAACGUUUGACUGUCuaucuuauaugaaaauuuuuuuauuaguauuuuuauuauuguuagaugauaaaacaugaauaauacuuuaugcaugacuuaucuuuuuaauuuuuuucauaauuuuuuuaaauaaaauGAACGGUCAAAUGUUAGACACGGAaacu
((((((((((((.(((((((((((((.(((.((((.((((((..((.....(((((....)))))..((((((.(((((..((((.((((....)))).))))..)))))..)))))).........))..)))))).)))).))).))))))))))))).))))))))))))

Structure

            C             C   c    a      uu  uuuauuaguauuuuuauuauu      -u     aa    a    u 
gguuuuCGUGUU AACGUUUGACUGU uau uuau ugaaaa  uu                     guuaga  gauaa  caug auaa a
|||||||||||| ||||||||||||| ||| |||| ||||||  ||                     ||||||  |||||  |||| ||||  
ucaaAGGCACAG UUGUAAACUGGCA Gua aaua auuuuu  aa                     uaauuu  cuauu  guac uauu c
            A             A   a    a      uu  ------------uacuuuuuu      uu     ca    g    u 

Annotation confidence Low

Genome context

Unknown

Mature osa-miR812o-5p

• Accession: MIMAT0019681
• Description: Oryza sativa osa-miR812o-5p mature miRNA
• Sequence: 7 - CGUGUUCAACGUUUGACUGUC - 27
• Evidence: experimental ; Illumina [1]

Mature osa-miR812o-3p

• Accession: MIMAT0019682
• Description: Oryza sativa osa-miR812o-3p mature miRNA
• Sequence: 146 - GAACGGUCAAAUGUUAGACACGGA - 169
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21113019
   Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)
   "Li T, Li H, Zhang YX, Liu JY"
   "Nucleic Acids Res (2011) 39:2821-2833