Stem-loop osa-MIR812o

Accession

MI0017255

Description

Oryza sativa osa-MIR812o precursor miRNA

Literature search

9 open access papers mention osa-MIR812o
(15 sentences)

Sequence

49767 reads, 183.0 reads per million, 142 experiments

gguuUUCGUGUUCAACGUUUGACUgucuaucuuauaugaaaauuuuuuuauuaguauuuuuauuauuguuagaugauaaaacaugaauaauacuuuaugcaugacuuaucuuuuuaauuuuuuucauaauuuuuuuaaauaaaaugaacggucAAAUGUUAGACACGGAAACu
((((((((((((.(((((((((((((.(((.((((.((((((..((.....(((((....)))))..((((((.(((((..((((.((((....)))).))))..)))))..)))))).........))..)))))).)))).))).))))))))))))).))))))))))))

Structure

            C             c   c    a      uu  uuuauuaguauuuuuauuauu      -u     aa    a    u 
gguuUUCGUGUU AACGUUUGACUgu uau uuau ugaaaa  uu                     guuaga  gauaa  caug auaa a
|||||||||||| ||||||||||||| ||| |||| ||||||  ||                     ||||||  |||||  |||| ||||  
uCAAAGGCACAG UUGUAAAcuggca gua aaua auuuuu  aa                     uaauuu  cuauu  guac uauu c
            A             a   a    a      uu  ------------uacuuuuuu      uu     ca    g    u 

Annotation confidence Medium

Genome context

10: 20655529-20655699 [+]

Mature osa-miR812o-5p

• Accession: MIMAT0019681
• Description: Oryza sativa osa-miR812o-5p mature miRNA
• Sequence: 5 - UUCGUGUUCAACGUUUGACU - 24
• Evidence: experimental ; Illumina [1]

Mature osa-miR812o-3p

• Accession: MIMAT0019682
• Description: Oryza sativa osa-miR812o-3p mature miRNA
• Sequence: 154 - AAAUGUUAGACACGGAAAC - 172
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21113019
   Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)
   "Li T, Li H, Zhang YX, Liu JY"
   "Nucleic Acids Res (2011) 39:2821-2833