Stem-loop tcc-MIR156f

Accession

MI0017458

Description

Theobroma cacao tcc-MIR156f precursor miRNA

Gene family

MIPF0000008; MIR156

Sequence

uacggaugaggacgcuuuugUUGACAGAAGAUAGAGAGCACaacugaacauacccagaaaaggccuguguaugagcagccuugugcucucuuuucuucugucaauggaauuuucugucagaguu
.((...((((((...((((((((((((((((.((((((((((((((..(((((.(((.......))).)))))..)))..)))))))))))..))))))))))))))))...))).)))..)).

Structure

u  gga   -   cgc                -U           --   aa     c   aa 
 ac   uga gga   uuuugUUGACAGAAGA  AGAGAGCACaa  cug  cauac cag  a
 ||   ||| |||   ||||||||||||||||  |||||||||||  |||  ||||| |||  a
 ug   acu ucu   aagguaacugucuucu  ucucucguguu  gac  guaug guc  g
u  -ag   g   uuu                uu           cc   ga     u   cg 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR156f

• Accession: MIMAT0020374
• Description: Theobroma cacao tcc-miR156f mature miRNA
• Sequence: 21 - UUGACAGAAGAUAGAGAGCAC - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108