Stem-loop tcc-MIR160a

Accession

MI0017460

Description

Theobroma cacao tcc-MIR160a precursor miRNA

Sequence

accugggaaugggauuguucUGCCUGGCUCCCUGAAUGCCAucuaagaagcuugucaaagaguguuggcugccuucuuacauggcaugaggggagucaugcaggcuuaacaaucccaaguua
.........((((((((((((((.(((((((((..(((((((.(((((((...(((((......)))))...))))))).)))))))..))))))))).)))))....))))))))).....

Structure

accugggaa         ----     C         GA       c       cuu     ag 
         ugggauugu    ucUGC UGGCUCCCU  AUGCCAu uaagaag   gucaa  a
         |||||||||    ||||| |||||||||  ||||||| |||||||   |||||   
         acccuaaca    ggacg acugagggg  uacggua auucuuc   cgguu  g
----auuga         auuc     u         ag       c       cgu     gu 

Annotation confidence Low

Genome context

Unknown

Mature tcc-miR160a

• Accession: MIMAT0020376
• Description: Theobroma cacao tcc-miR160a mature miRNA
• Sequence: 21 - UGCCUGGCUCCCUGAAUGCCA - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108