Stem-loop tcc-MIR162

Accession

MI0017463

Description

Theobroma cacao tcc-MIR162 precursor miRNA

Sequence

aggaaaaaggguuaaagacacuggaggcagcgguucaucgaucucuuccugggaauuuuguugugagaauaacacaaauacaugauucgaUCGAUAAACCUCUGCAUCCAGagccuuaccucucucuuuaa
.(((....((((..(((.(.(((((.((((.((((.(((((((...((.((...((((((((((....)))))).)))).)).))...))))))).)))).)))).))))).).)))))))...)))....

Structure

---a   aaaa    ua   a a     g    c    c       ucu  c  gga    -      g 
    gga    gggu  aag c cugga gcag gguu aucgauc   uc ug   auuu uguugu a
    |||    ||||  ||| | ||||| |||| |||| |||||||   || ||   |||| ||||||  
    ucu    ucca  uuc g GACCU CGUC CCAA UAGCUag   ag ac   uaaa acaaua g
aauu   -cuc    --   c a     A    U    A       cuu  u  --a    c      a 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR162

• Accession: MIMAT0020379
• Description: Theobroma cacao tcc-miR162 mature miRNA
• Sequence: 91 - UCGAUAAACCUCUGCAUCCAG - 111
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108